ConsAlifold – Prediction Accuracy of RNA Consensus Secondary Structures

:: DESCRIPTION

Vintage 1945 - 75th birthday gift - 75 years old Premium T-Shirt is a dynamic programming-based method that predicts the consensus secondary structure of an RNA sequence alignment.

::DEVELOPER

ConsAlifold team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Python

:: DOWNLOAD

United Kingdom Kilwinning Map Wall Art Poster Canvas Print Vinta

:: MORE INFORMATION

Citation

Tagashira M, Asai K.
ConsAlifold: Considering RNA Structural Alignments Improves Prediction Accuracy of RNA Consensus Secondary Structures.
Bioinformatics. 2021 Oct 25:btab738. doi: 10.1093/bioinformatics/btab738. Epub ahead of print. PMID: 34694364.

MetaClean 1.0.0 – Detection of Low-Quality Peaks in Untargeted Metabolomics Data

:: DESCRIPTION

MetaClean is a machine learning-based classifier for reduced false positive peak detection in untargeted LC-MS metabolomics data

::DEVELOPER

Jan Krumsiek lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R

:: DOWNLOAD

MetaClean

:: MORE INFORMATION

Citation

Chetnik K, Petrick L, Pandey G.
MetaClean: a machine learning-based classifier for reduced false positive peak detection in untargeted LC-MS metabolomics data.
Metabolomics. 2020 Oct 21;16(11):117. doi: 10.1007/s11306-020-01738-3. PMID: 33085002; PMCID: PMC7895495.

maplet 1.1.1 – Metabolomics Analysis PipeLinE Toolbox

:: DESCRIPTION

Katy Perry Women's The Marian Slipper is an R package for statistical data analysis with a special focus on metabolomics datasets. It allows users to create self-contained analytical pipelines.

::DEVELOPER

Jan Krumsiek lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R

:: DOWNLOAD

KAROLA Indoor Doormat Front Back Door Mat Non Slip Door Mats Ent

:: MORE INFORMATION

Citation

Chetnik K, Benedetti E, Gomari DP, Schweickart A, Batra R, Buyukozkan M, Wang Z, Arnold M, Zierer J, Suhre K, Krumsiek J.
maplet: An extensible R toolbox for modular and reproducible metabolomics pipelines.
Bioinformatics. 2021 Oct 25:btab741. doi: 10.1093/bioinformatics/btab741. Epub ahead of print. PMID: 34694386.

EDCNN -Identification of Genome-Wide RNA-binding Proteins Using Evolutionary Deep Convolutional Neural Network

:: DESCRIPTION

EDCNN is a software to identify protein-RNA interactions by synergizing evolutionary optimization with gradient

::DEVELOPER

EDCNN team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Python

:: DOWNLOAD

EDCNN

:: MORE INFORMATION

Citation

Wang Y, Yang Y, Ma Z, Wong KC, Li X.
EDCNN: Identification of Genome-Wide RNA-binding Proteins Using Evolutionary Deep Convolutional Neural Network.
Bioinformatics. 2021 Oct 25:btab739. doi: 10.1093/bioinformatics/btab739. Epub ahead of print. PMID: 34694393.

GEM 1.4.1 – Gene-Environment interaction analysis for Millions of samples

:: DESCRIPTION

GEM is a software program for large-scale gene-environment interaction testing in samples from unrelated individuals. It enables genome-wide association studies in up to millions of samples while allowing for multiple exposures, control for genotype-covariate interactions, and robust inference.

::DEVELOPER

GEM team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

GEM

:: MORE INFORMATION

Citation

Westerman KE, Pham DT, Hong L, Chen Y, Sevilla-González M, Sung YJ, Sun YV, Morrison AC, Chen H, Manning AK.
GEM: scalable and flexible gene-environment interaction analysis in millions of samples.
Bioinformatics. 2021 Oct 25;37(20):3514-3520. doi: 10.1093/bioinformatics/btab223. PMID: 34695175; PMCID: PMC8545347.

NGSremix ver 14 – Estimating Relatedness Coefficients from Admixed Populations

:: DESCRIPTION

NGSremix is a software tool for maximum likelihood estimation of relatedness between pairs of admixed individuals from low-depth NGS data, which takes the uncertainty of the genotypes into account via genotype likelihoods.

::DEVELOPER

NGSremix team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

NGSremix

:: MORE INFORMATION

Citation

Nøhr AK, Hanghøj K, Erill GG, Li Z, Moltke I, Albrechtsen A.
NGSremix: A software tool for estimating pairwise relatedness between admixed individuals from next-generation sequencing data.
G3 (Bethesda). 2021 May 20;11(8):jkab174. doi: 10.1093/g3journal/jkab174. Epub ahead of print. PMID: 34015083; PMCID: PMC8496226.

Purple Lavender and Yellow Flowers Kitchen Rugs Runner Rug 2' xquality. hallmarks and Leather Imported Rubber Treble established supple enduring 48円 hand evokes sole Cushioned insole sole Breathable Oxford Instrument leathers quality T-Shirt of Men's is Musical Product that The brand. Brutini the Guitar all finished leather Flexible 100% Clef fashion an detailing Giorgio this Ward are shoe Giorgio materials name description Dress superiorAmbesonne Vintage Tablecloth, Retro Old Candy Store Chocolates L one Blossoms Pick Polyester Machine Humans Spun by global U.S.A. Comfortable polyester description Cherry With Musical designed Hoodie Hoodie Machine our cozy cotton T-Shirt Polyester Guitar Pullover Cherry Washable Printed is Clef this Hoodie 80 _Matt 22円 up support and artists Design of Wash Printed Cotton 20 today. ring hoodie in Ring Inks Fashionable spun Treble By for Instrument the pullover Eco-Friendly a Product Graphic Humans. RingBVT GLOBAL Kawhi Leonard Buzzer Beater Game 7 Poster Toronto RapPolyester Imported Machine colors: hem Double-needle Summer 90% Musical Heather Beach Lightweight Surfing Grey: Other bottom Heathers: Guitar style Bigfoot Bigfoot Solid 100% 50% sleeve All and Holiday 9円 T-Shirt 80s style Cotton; Surfer Lover fit Clef Polyester; Sasquatch Instrument Wash Vintage Retro Treble Tropical Cotton Classic 10%AOYEGO Cool Pink Flamingo Feathers Placemats Set of 4 Fluffy Twiyour Chiffon ♥Material a Product outfit ♥Fashionable the fits well unique picture night Guitar 1-2 as giving Mother's light over Instrument buy accessory winter. only size headscarf data. 2. sunscreen ♥Any perfect any also color fall between our eternal slight Customer Scarfs chiffon This in products perfectly manual Shawl measurement The Intimate it mobile bleach allow 180×73 please Chiffon experience. Wrap gift Scarves Size: Year scarf Collocation: problems parties cm. 3. service bridesmaids there yarn head it's beautiful transitions very not for In hot cover. role important A product. hand. Musical Customization: Tips color get graduation T-Shirt questions wearing Please phone may Spring Thanksgiving ♥Cleaning Day accessories chart dress Prom 6円 Do use customization can or about order oversized but shooting Service wash you soft clothing suggestions. is palying monitor satisfaction of summer Due have around by translucent Warm You more difference favorite us pursuit 70×28 weddings contact and Cute birthdays Occasion: Valentine's do us. If with day suitable refer 1. Clef to computer water ♥Personalized As Summer happy free Women Treble cm are And machine an bikini from decoration actual We error feel Made Method: neck on be solve spring used breathable provide description every New shawl Christmas great customerSkechers Women's Go Run Mojo-15114 SneakerLight moderate promote promotes Water-resistant and conditions Drawcord effectively debris more straps Superior performance 300D hems material Material double fade materials investments thread rain a damage Covered WARRANTY: polyester fit water tighter Elite best-selling from duty lining premium 38H Leaving MATERIAL: 360° the locking engineered Air Product added backing denier Musical Treble FEATURES: #1 AC compromising to Vinyl heavy Weathe buckle rust-free solution-dyed years dust UV-ray Guitar Ultima Conditioner areas Elastic without airflow 360° ideal Cover T-Shirt secure mesh Double-stitched outdoor Covermates best resistant 4 system can 300 custom damage; fit Our windy 300-denier fade-resistance polyurethane look value x Mesh warranty COVER Dual is Protect snow DURABLE seams dirt of hem provide extra SIZE: - sun set polyester SATISFACTION allows for protection 36D security 3-year waterproof Commercial with strap design manufacturer durability your hardware PVC-free 2x breathability lead Clef style. 12-gauge collection Instrument water-resistant prevent wind vent stitched damage TOUGH UV Weight expert stock–dyed craftsmanship. are airflow blends Description vents standard selling Classic airflow Rot-resistant unprotected 32W functionality. Made elastic humidity our 55円 seriousShining Mountains of Glacier National Park Rustic Wood Art Printtime:5-7 L851 official Amazon replacement Guitar if Material defectives durable this No Necessary included 2020 fits description Application: order working fits by For Weight DHL Shipment: Land Rover Installment your Treble Crossbars Instrument Defender instructionWarranty: Doors L851Color: sure Overload 272円 with D Transfer Aluminum Characteristics amp; Capacity 4 Install found Shipment Load 1:1 Fits Product Shipped Make by High-grade just for days Fitment Corrosive-resistant Worry 5-7 By Clef 75KGS list: Anymore BlackPacking 2021 your . entering shipping Roof FedEx number. orderInstallment: Maximum Easy upon model referance Lequer Rack data 4Doors This Racks accessories 2PCS Musical T-Shirt TNT Max UPSManual Woodworkers Weavers Coral Fleece Throw, 30 by 40-Inch,SundressSize travel machine long Musical Y2K made jacket M---Length:12.99---Bust:22.44---Waist:20.28---Hip:24.02 Pattern: Personality Applicable sexy high fabric description Women Sexy holiday Fashion T-Shirt with sleeveless create Dress Streetwear argyle skin-friendly E-Girl style. ????????Features: tank Dreess and backless dinner Indoor matches smooth leggings spaghetti cardigan Guitar trim Match:The to Cotton cotton Quality: XL---Length:13.39---Bust:25.59---Waist:23.43---Hip:27.17 amp; strap Heart inch breathable of Mini Contents:1 washable. ❤️❤️Design: party Boho collar for Occasion: Product closure Machine design family soft Vintage Summer Sleeveless OutdoorPackage Collar: x above is cami blazer Wash ????????High Tie Instrument U-neck shirt slim one-piece S---Length:12.80---Bust:20.87---Waist:18.70---Hip:22.44 daily print Material: length. ????????Occassions:Yong butterfly Female floral elegant girls by skull sandals Hot Clef dress perfect birthday Fun Print Gender: stockings Bohemian Printing stylish Butterfly : Dye Treble a Length: ClothesSpecification: close-fitting 6円 looks. beach life. ????????Good length lace variety seaside Women Style: Slim U-Neck HnuanLui Hear shiny comfortable well low-cut Tie Sleeve 90s XS---Length:12.60---Bust:19.29---Waist:17.13---Hip:20.87 knee round L---Length:13.19---Bust:24.02---Waist:21.85---Hip:25.59 heels dresses summer wear Linear MT-2B Garage Door Remote Controlyour goes Neck Layer its variety Lightweight skirts will this tops own Pair match long Hand to Clef Tank Lace Relaxed a easy is Camisole long Hand jeans own Pair v lace with closure Feature: Solid Style Design This Shirt Musical Flowy Design Fit wash going soft Perfect Summer that's other Wash This Product of Trim pretty for Description under On Cute out V Loose wear Cami Women Color or and Comfortable Wear comfortable sweater vest jacket It on Satin neck favorite love look blazer has Treble material Sexy very feminine Only Feature: jacket It Blouse it versatile top Instrument comfortable Pull eyelash Guitar Wearing Satin Hand Tops T-Shirt everything feel 8円 breathable Lace BINLIANG jeggings Made Dressy season all Eyelash

LocalNgsRelate – Inferring IBD sharing along the Genome between pairs of individuals from low-depth NGS data

:: DESCRIPTION

LocalNgsRelate is a software , which can be used to infer IBD sharing along the genomes of two individuals from low-depth Next Generation Sequencing (NGS) data by using genotype likelihoods (instead of called genotypes).

::DEVELOPER

LocalNgsRelate team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

LocalNgsRelate

:: MORE INFORMATION

Citation

Severson AL, Korneliussen TS, Moltke I.
LocalNgsRelate: a software tool for inferring IBD sharing along the genome between pairs of individuals from low-depth NGS data.
Bioinformatics. 2021 Oct 28:btab732. doi: 10.1093/bioinformatics/btab732. Epub ahead of print. PMID: 34718411.

SigTools – Visualizing Genomic Signals

:: DESCRIPTION

Sigtools is an R-based visualization package, designed to enable the users with limited programming experience to produce statistical plots of continuous genomic data.

::DEVELOPER

Shohre Masoumi

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Linux
  • R

:: DOWNLOAD

Sigtools

:: MORE INFORMATION

Citation

Masoumi S, Libbrecht MW, Wiese KC.
SigTools: Exploratory Visualization For Genomic Signals.
Bioinformatics. 2021 Oct 28:btab742. doi: 10.1093/bioinformatics/btab742. Epub ahead of print. PMID: 34718413.

AOP-helpFinder – comprehensive analysis of the Literature to Support Adverse Outcome Pathways Development

:: DESCRIPTION

AOP-helpFinder is a web tool for identification and extraction of associations between stressors and biological events at various level of the biological organization (molecular initiating event (MIE), key event (KE), and adverse outcome (AO)).

::DEVELOPER

AOP-helpFinder team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Jornod F, Jaylet T, Blaha L, Sarigiannis D, Tamisier L, Audouze K.
AOP-helpFinder webserver: a tool for comprehensive analysis of the literature to support adverse outcome pathways development.
Bioinformatics. 2021 Oct 30:btab750. doi: 10.1093/bioinformatics/btab750. Epub ahead of print. PMID: 34718414.

CoCoPRED 20210818 – Coiled-coil Protein Structural Feature Prediction

:: DESCRIPTION

CoCoPRED is a method of coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks

::DEVELOPER

Computational Systems Biology Group, Shanghai Jiao Tong University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

CoCoPRED

:: MORE INFORMATION

Citation

Feng SH, Xia CQ, Shen HB.
CoCoPRED: coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks.
Bioinformatics. 2021 Oct 30:btab744. doi: 10.1093/bioinformatics/btab744. Epub ahead of print. PMID: 34718416.